主要研究海洋化能合成生态系统（如深海热液、冷泉以及浅海富含有机质的沉积环境）中海洋无脊椎动物（以贝类、管虫为主）与化能微生物的共生关系、物种适应性演化、生物矿化以及种群连通性。采用的手段包括深海原位实验、生物信息学、分子生物学、同位素化学等。

(See below for the English version)

孙进    教授 博士生导师

E-mail：jin_sun@ouc.edu.cn 

学习工作简历：

2004-2008，中国海洋大学，海洋生命学院，学士

2008-2013，香港浸会大学，生物系，博士，导师：邱建文教授

2013-2015，香港浸会大学，博士后，导师：邱建文教授

2015-2018，香港科技大学，博士后，导师：钱培元教授

2018-2020，香港科技大学，研究助理教授

2020至今，中国海洋大学，“筑峰人才工程”特聘教授

主要研究方向：

    主要研究领域为海洋化能合成生态系统（如深海热液、冷泉以及浅海富含有机质的沉积环境）中海洋无脊椎动物（以贝类、管虫为主）与化能微生物的共生关系、物种适应性演化、生物矿化以及种群连通性。采用的手段包括深海原位实验、生物信息学、分子生物学、同位素化学等。

       迄今上述成果累计在（包括Science, Nature Ecology & Evolution, Nature Chemical Biology, Nature Communications, Molecular Biology & Evolution, ISME Journal, eLife等）刊物上发表论文100多篇。担任Marine Life Science & Technology编委、Frontiers in Marine Science领域主编、The Innovation 和The Innovation Geoscience青年编委；Science Advances, Nature Communications, ISME Journal, Molecular Biology and Evolution等杂志审稿人；第17届国际深海生物学会（DSBS）学术委员成员。

Research Interest

• Chemosynthetic ecosystems

• Deep-sea biology

• Comparative genomics

• Biomineralization

• Molecular phylogeny of Mollusca

Despite the hostile environment, the hydrothermal vent and cold seep ecosystems support dense populations of macrobenthos which, with the help of chemoautotrophic endosymbionts, are fuelled by simple reduced molecules such as methane and hydrogen sulfide. Studying vent and seep organisms may answer fundamental questions about their origin and evolution, population connectivity, as well as the adaptation to the extreme environments. We mainly employ a molecular-based -omics approach, combined with physical oceanography modelling, physico-chemical analysis, as well as field surveys.

Education

2008 B. Sc. Biochemistry and Molecular Biology, College of Marine Life Science, Ocean University of China (OUC), Qingdao, China

2013 Ph. D. Department of Biology, Hong Kong Baptist University (HKBU), Hong Kong, China, Supervisor: Prof. Jian-Wen Qiu

Thesis title: “Characterization of the egg and embryonic proteome of Pomacea canaliculata, and responses of the proteome to environmental stressors”

Professional Experience

2013 – 2015, Research Associate, Supervisor: Prof. Jian-Wen Qiu, Hong Kong Baptist University, Hong Kong

2015 – 2018, Post-doc fellow, Division of Life Science, Supervisor: Prof. Pei-Yuan Qian, Hong Kong University of Science and Technology

2018 – 2020, Research Assistant Professor, Department of Ocean Science, Hong Kong University of Science and Technology

2019 – 2020, External Researcher, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan

2020 – present, Professor (on probation), Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, China

1.      国家自然科学基金面上项目，黄海薄索足蛤与化能合成细菌共生的营养转化策略研究、2025-2028、主持。

2.      山东省杰出青年基金，“深海化能合成环境生物的适应与进化”、2024-2026。

3.      崂山实验室科创项目课题，“深海极端环境下的生命适应进化机制研究”、2022-2025、主持。

4.      国家自然科学基金面上项目，深海热液典型物种鳞足螺的种群连通机制研究、2022-2025、主持。

5.      中国海洋大学优秀青年科技人才培育计划（A类），深海无脊椎动物环境适应与进化、2022-2024、主持。

6.      国家自然科学优秀青年(海外)基金，“深海无脊椎动物环境适应与进化”、2022-2024。

7.      山东省泰山学者青年专家计划，2021-2025。

8.      中国海洋大学筑峰人才工程科研启动经费, 极端环境下海洋无脊椎动物适应机制、2021-2023、主持。

9.      国家重点研发计划，“深海多金属结核采矿试验工程”之“大型底栖生物毒性机理研究”，2016-2021、已结题、主持。

10.   香港大学资助委员会GRF, “Uncovering the scaly-foot snail genome to reveal how molluscs generate evolutionary novelties”，108万港币, 2019-2022、已结题、PI。

1. Chen Z., Antonio Baeza J., C. Chen, M. Teresa Gonzalez, V. Liz González, C. Greve, K.M. Kocot, P. Martinez Arbizu, J. Moles, T. Schell, E. Schwabe, Sun Jin, N.L.W.S. Wong, M. Yap-Chiongco, J.D. Sigwart^* (2025) A genome-based phylogeny for Mollusca is concordant with fossils and morphology. Science (in press). (软体动物门八个纲完整系统发育关系)

2. Gu Xinyu, C. Chen, K. Gao, Y. Zhou^*, Sun Jin^* (2025) Integrative taxonomy of new neritimorph limpets from Indian Ocean deep-sea hot vents shed light on their biogeographic history. Zoological Journal of the Linnean Society (in press).

3. Sigwart J.D.^*, Y. Li^*, Z. Chen, K. Vončina and Sun Jin^* (2024) Still waters run deep: Large scale genome rearrangements in the evolution of morphologically conservative Polyplacophora. eLife: 13:RP102542. (静水流深:形态保守的多板纲在进化中的大规模基因组重排)

4. Chen Chong, Liu Xu, Gu Xinyu, Qiu Jian-Wen, Sun Jin^*. (2024) Integrative taxonomy of a new giant deep-sea caudofoveate from South China Sea cold seeps. Zoosystematics and Evolution 100: 841–850. (神龙毛皮贝Chaetoderma shenloong，首个被报道生活在化能合成生态系统的尾腔纲软体动物)

5. Qi Ying, Zhong Zhaoyan, Liu Xu, He Xing, Zhou Yadong, Zhang Lili, Chen Chong, Linse Katrin, Qiu Jian-Wen, Sun Jin^*. (2024) Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda. Molecular Phylogenetics and Evolution 190: 107968.

6. He Xing, Xu Ting, Chen Chong, Liu Xu, Li Yi-Xuan, Zhong Zhaoyan, Gu Xinyu, Lin Yi-Tao, Lan Yi, Yan Guoyong, Sun Yanan, Qiu Jian-Wen^*, Qian Pei-Yuan^*, Sun Jin^*. (2023) Same (sea) bed different dreams: Biological community structure of the Haima seep reveals distinct biogeographic affinities. The Innovation Geoscience 1: 100019. [同（海）床异梦：南海海马冷泉生物群落具有高度特异性]

7. Li Yunlong, He Xing, Lin Yuxuan, Li Yi-Xuan, Kamenev Gennady M., Li Jiying, Qiu Jian-Wen, Sun Jin^*. (2023) Reduced chemosymbiont genome in the methane seep thyasirid and the cooperated metabolisms in the holobiont under anaerobic sediment. Molecular Ecology Resources 23: 1853–1867.

8. Liu Xu, Sigwart Julia D.^*, Sun Jin^* (2023) Phylogenomic analyses shed light on the relationships of chiton superfamilies and shell-eye evolution. Marine Life Science & Technology 5: 525–537.

9. Sun Jin, Li Runsheng, Chen Chong, Julia D. Sigwart, Kevin M Kocot^*. (2021) Benchmarking Oxford Nanopore read assemblers for high-quality molluscan genomes. Philosophical Transactions of Royal Society B 376: 20200160. (英国皇家学会软体动物基因组专刊)

10. Sun Jin^#, Chong Chen^#, Norio Miyamoto^#, Runsheng Li, Julia D. Sigwart, Ting Xu, Yanan Sun, Wai Chuen Wong, Jack C.H. Ip, Weipeng Zhang, Yi Lan, Dass Bissessur, Tomo-o Watsuji, Hiromi Kayama Watanabe, Yoshihiro Takaki, Jian-Wen Qiu, Ken Takai, Qian Pei-Yuan^*. (2020) The Scaly-foot Snail genome and implications for the origins of biomineralised armour. Nature Communications11: 1657. (主编精选文章)

11. Kwan Yick Hang, Zhang Dongsheng, Mestre Nélia, Wang Xiaogu, Lu Bo, Wang Chunsheng, Wong Wai Chuen, Qian Pei-Yuan^*; Sun Jin^*. (2019) Comparative proteomics on deep-sea amphipods after in situ copper exposure. Environmental Science & Technology53: 13981–13991.(ES&T封面文章)

12. Sun Jin^#, Mu Huawei^#, Jack C.H. Ip^#, Runsheng Li^#, Ting Xu, Alice Accorsi, Alejandro Sánchez Alvarado, Eric Ross, Yi Lan, Yanan Sun, Alfredo Castro-Vazquez, Israel A. Vega, Horacio Heras, Santiago Ituarte, Bert Van Bocxlaer, Kenneth A. Hayes, Robert H. Cowie, Zhongying Zhao, Yu Zhang, Pei-Yuan Qian^*, Jian-Wen Qiu^* (2019) Signatures of divergence, invasiveness and terrestralization revealed by four apple snail genomes. Molecular Biology and Evolution 36: 1507–1520.

13. Sun Jin, Zhang Y, Xu T, Zhang Y, Mu H, Zhang Y, Lan Y, Fields CJ, Hui JHL, Zhang W, Li R, Nong W, Cheung FKM, Qiu J-W^*, Qian Pei-Yuan^*. (2017) Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes. Nature Ecology & Evolution 1: 121.(同期配发的“新闻与观点”中作为重点成果予以推荐)

14. Lan Yi^#, Sun Jin^#, Tian Renmao, Bartlett Douglas H., Li Runsheng, Wong Yue Him, Zhang Weipeng, Qiu Jian-Wen, Xu Ting, He Li-Sheng, Tabata Harry G., Qian Pei-Yuan^*. (2017) Molecular adaptation in the world's deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod Hirondellea gigas. Molecular Ecology 26: 3732–3743.

(Representative publications, ^# equal contribution, * corresponding author)：

For full list of publications, please visit: 

ResearchGate: https://www.researchgate.net/profile/Jin_Sun

Google Citations: https://scholar.google.com/citations?user=5xNJ4PUAAAAJ

1. 第八届曾呈奎海洋科技奖之“青年科技奖”（2024）：孙进

2. 中国海洋大学优秀教师（2023）：孙进

3. 第十届全国海洋生态研讨会研究生优秀口头报告奖（2024）：李盟功

4. 第九届青年地学论坛优秀学生报告奖（2024）：张弘引

5. 2023年海洋基因组学会议 (ICG-Ocean) 最佳报告奖：贺星

6. 海水养殖教育部重点实验室“牧海之星”奖学金（2024）：贺星

7. 水产学院“学术之星”（2023）：贺星

8. 研究生国家奖学金（2023）：贺星

9. 进化所“达尔文之星”奖学金：仲召延（2022），刘旭、綦莹（2023），谷欣雨（2024）

主讲课程：

《水生生物学》（水产学院养殖系本科生必修课程）

科学普及：

《鳞足螺的前世今生》

https://weibo.com/ttarticle/p/show?id=2309404502728045887536

青岛二中“启航计划”指导教师